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Cheap flights from Mykonos to Heraklion from £51

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 6/9. Fares are subject to change and may not be available on all flights or dates of travel.
JMK — HER
14 Sep — 21 Sep1
1 adult
1 adult, Economy, 0 bags

Cheap flight deals from Mykonos to Heraklion

Enter your travel dates to find the best prices.

Cheapest flights from Mykonos to Heraklion
Explore the most affordable flight options available from Mykonos to Heraklion. Find the lowest fares from popular airlines and budget airlines, with prices last updated on 15 August 2026.

Fri 11/919:00 -
Nonstop1h 00m
Sun 13/918:00 -
Nonstop0h 50m
Deal found 14/8£59
Tue 1/920:35 -
Nonstop1h 00m
Sat 5/921:55 -
1 stop2h 35m
Deal found 12/8£124
Fri 21/819:00 -
Nonstop1h 00m
Sat 22/813:00 -
1 stop7h 10m
Deal found 13/8£197
Fri 28/819:00 -
Nonstop1h 00m
Tue 1/919:10 -
Nonstop0h 50m
Deal found 13/8£199
Thu 3/914:25 -
1 stop8h 00m
Sun 6/908:40 -
1 stop23h 35m
Deal found 13/8£206
Thu 3/908:55 -
1 stop5h 25m
Sun 6/918:00 -
Nonstop0h 50m
Deal found 12/8£217

Find flight deals from Mykonos to Heraklion

Discover tips and strategies to find the most affordable flight options for your journey from Mykonos (JMK) to Heraklion (HER). Learn about various techniques such as flexible date searches, comparing prices across and setting up price alerts. Use these methods to find the cheapest flights available for your travel needs. Data last updated 15 August 2026.

Round-trip from

£59

One-way from

£51
Aegean Airlines
  • Aegean Airlines
  • 11/9-13/9
  • Nonstop
  • 1h 50m total
  • Mykonos to Heraklion
Search Deals
Aegean Airlines
  • Aegean Airlines
  • 6/9
  • Nonstop
  • 1h 00m total
  • Mykonos to Heraklion
Search Deals

Cheapflights Fare Finder

 
Customise your flight search to find flights from Mykonos to Heraklion that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 858,174 searches. Data last updated 15 August 2026.
Use the filters below to find and compare flights from Mykonos to Heraklion that are best for you.

Fly from

Fly to

Route

Depart

Return

Price

Cheapest return flight

MykonosHeraklion

JMK Mikonos - HER Heraklion N. Kazantzakis Apt.

JMKHER

Mikonos

Fri 11/9

20:45-00:35

1 stop3h 50m

Heraklion N. Kazantzakis Apt.

Sun 13/9

18:00-18:50

Nonstop0h 50m

£116

MykonosHeraklion

JMK Mikonos - HER Heraklion N. Kazantzakis Apt.

JMKHER

Mikonos

Tue 1/9

20:35-21:35

Nonstop1h 00m

Heraklion N. Kazantzakis Apt.

Sat 5/9

21:55-00:30

1 stop2h 35m

£151

MykonosHeraklion

JMK Mikonos - HER Heraklion N. Kazantzakis Apt.

JMKHER

Mikonos

Wed 26/8

17:45-21:15

1 stop3h 30m

Heraklion N. Kazantzakis Apt.

Wed 2/9

23:30-05:25

1 stop5h 55m

£176
Fastest return journey

MykonosHeraklion

JMK Mikonos - HER Heraklion N. Kazantzakis Apt.

JMKHER

Mikonos

Fri 28/8

19:00-20:00

Nonstop1h 00m

Heraklion N. Kazantzakis Apt.

Tue 1/9

19:10-20:00

Nonstop0h 50m

£199

MykonosHeraklion

JMK Mikonos - HER Heraklion N. Kazantzakis Apt.

JMKHER

Mikonos

Thu 3/9

14:25-22:25

1 stop8h 00m

Heraklion N. Kazantzakis Apt.

Sun 6/9

08:40-08:15

1 stop23h 35m

£206

MykonosHeraklion

JMK Mikonos - HER Heraklion N. Kazantzakis Apt.

JMKHER

Mikonos

Thu 3/9

08:55-14:20

1 stop5h 25m

Heraklion N. Kazantzakis Apt.

Sun 6/9

18:00-18:50

Nonstop0h 50m

£217
Cheapest one-way
Fastest single journey

MykonosHeraklion

JMK Mikonos - HER Heraklion N. Kazantzakis Apt.

JMKHER

Mikonos

Sun 6/9

19:40-20:40

Nonstop1h 00m

£51

MykonosHeraklion

JMK Mikonos - HER Heraklion N. Kazantzakis Apt.

JMKHER

Mikonos

Thu 20/8

20:45-00:35

1 stop3h 50m

£94

MykonosHeraklion

JMK Mikonos - HER Heraklion N. Kazantzakis Apt.

JMKHER

Mikonos

Mon 28/9

14:50-20:10

1 stop5h 20m

£96

MykonosHeraklion

JMK Mikonos - HER Heraklion N. Kazantzakis Apt.

JMKHER

Mikonos

Thu 20/8

09:05-14:55

2 stops29h 50m

£145

Flights are sorted by cheapest return flights first.

Deals found on 12/8

Sorted by cheapest first

Best time to book a flight from Mykonos to Heraklion

Have a flexible travel schedule? Discover the best time to fly to Heraklion from Mykonos with our price prediction graph.
Estimated return price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight from Mykonos to Heraklion

What is the cheapest time of day to fly from JMK to HER?

Find hourly flight availability from Mykonos to Heraklion. Discover flight options and departure times throughout the day, allowing you to choose a departure time that suits your schedule. Data last updated 15 August 2026.

When flying from Mykonos to Heraklion, the time of day you decide to fly out makes little to no difference towards the overall price you’ll pay on tickets.

Related info for your journey

Find useful and relevant information for your journey from Mykonos to Heraklion. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • How long is the flight from Mykonos to Heraklion?

    There are many flights that can get you from Mykonos to Heraklion in 3h 50m. Fly via Aegean Airlines to get the fastest option. Mykonos and Heraklion are separated by a distance of 145 mi.

  • Can I find deals for flights from Mykonos to Heraklion that include hotel bookings?

    Yes. In addition to deals on Mykonos to Heraklion flights, Cheapflights offers holiday packages that include both flights and hotel.

  • How can I find direct flights from Mykonos to Heraklion?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Mykonos to Heraklion.

  • Can I find deals for business class flights from Mykonos to Heraklion?

    Yes. Cheapflights offers flight deals from Mykonos to Heraklion by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

See more FAQs

Travelling to a place near Heraklion?

Book flights to Heraklion if you plan to visit one of these locations
Hersonissos
Stalida
Gouves

Browse thousands of different options on Cheapflights for your next trip

Toggle through the tabs below to find thousands of options on Cheapflights for your next trip.

Complete your trip

Complete your trip to Heraklion by adding a car hire and/or hotel booking to your travel itinerary.
Heraklion car hire
Heraklion N. Kazantzakis Apt. Airport car hire
Chania car hire
Mália car hire
Hersonissos car hire
Sitia car hire

Fly with Cheapflights

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How does Cheapflights help users find flights from Mykonos to Heraklion?

Cheapflights helps you search for flights from Mykonos to Heraklion via 900+ travel sites so you don’t have to. After performing a flight search, users can also filter their flight selection by filtering for price, number of stops, airlines, and so on.

Why should you use Cheapflights to find cheap flight tickets from Mykonos to Heraklion?

It’s simple! Cheapflights, which is free to use for everyone, saves millions of users time and money every year by helping them find the cheapest and most suitable flights from Mykonos to Heraklion.

Can Cheapflights find flights from Mykonos to Heraklion with no change fees?

Yes! Cheapflights helps users easily find flights from Mykonos to Heraklion with no change fees.

Can Cheapflights notify me if prices for flights from Mykonos to Heraklion become cheaper?

Yes, and it’s super simple to set up. Click the bell icon next to the flight deals above and provide a valid email address to enable Price Alerts. That’s it!

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